NutMEG.culture.base_organism.adaptations package¶
Submodules¶
NutMEG.culture.base_organism.adaptations.Tadaptations module¶
Class for calculating adaptations to adverse T conditions
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class
NutMEG.culture.base_organism.adaptations.Tadaptations.Tadaptations(host)¶ Bases:
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getLeverME(cutoff_pc=10)¶ Power cost due to temperature according to Lever et al 2015 @param cutoff_pc the % racemization of AA in proteins at which it is replaced.
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getTijuisME()¶ Power cost due to temperature according to Tijhuis 1993
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NutMEG.culture.base_organism.adaptations.pHadaptations module¶
Class for calculating adaptations to adverse pH conditions
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NutMEG.culture.base_organism.adaptations.pHadaptations.getEnergyPump(pHint, pHext, T=298)¶
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NutMEG.culture.base_organism.adaptations.pHadaptations.getfluxH(memb_pot, perm, pHint, pHext, area, K=38.7, T=298)¶
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NutMEG.culture.base_organism.adaptations.pHadaptations.getfluxOH(memb_pot, perm, pHint, pHext, area, K=38.7, T=298)¶